PhyloTree.SequenceSimulation Namespace Reference

Contains classes and methods that can be used to simulate sequence evolution. More...

Classes
class	ImmutableRateMatrix
	Represents a rate matrix whose values cannot be changed after initialisation. More...
class	IMutableRateMatrix
	Represents a rate matrix whose values can be changed after initialisation. More...
class	IndelModel
	Represents a model for sequence insertion/deletion. More...
struct	Insertion
	Represents an insertion event. More...
class	MutableRateMatrix
	Represents a rate matrix whose values can be changed after initialisation. More...
class	RateMatrix
	Represents a rate matrix for a continuous-type Markov chain model. This type cannot be instantiated directly, please use MutableRateMatrix or ImmutableRateMatrix instead, or access the static members for some pre-baked common rate matrices for DNA and protein evolution. More...
class	Sequence
	Represents a sequence of characters. More...
class	SequenceSimulation
	Contains methods to simulate sequence evolution. More...

Detailed Description

Contains classes and methods that can be used to simulate sequence evolution.