PhyloTree Namespace Reference

Contains classes and methods to read, write and manipulate phylogenetic trees. More...

Namespaces
namespace	Extensions
	Contains useful extension methods.
namespace	Formats
	Contains classes and methods to read and write phylogenetic trees in multiple formats
namespace	SequenceSimulation
	Contains classes and methods that can be used to simulate sequence evolution.

Classes
class	AttributeDictionary
	Represents the attributes of a node. Attributes Name, Length and Support are always included. See the respective properties for default values. More...
class	TreeCollection
	Represents a collection of TreeNode objects. If the full representations of the TreeNode objects reside in memory, this offers the best performance at the expense of memory usage. Alternatively, the trees may be read on demand from a stream in binary format. In this case, accessing any of the trees will require the tree to be parsed. This reduces memory usage, but worsens performance. The internal storage model of the collection is transparent to consumers (except for the difference in performance/memory usage). More...
class	TreeNode
	Represents a node in a tree (or a whole tree). More...

Detailed Description

Contains classes and methods to read, write and manipulate phylogenetic trees.