- a -

• AllAttributes : PhyloTree.Formats.BinaryTreeMetadata
• AttributeName : PhyloTree.Formats.Attribute
• Attributes : PhyloTree.TreeNode

- c -

• Children : PhyloTree.TreeNode
• Conservation : PhyloTree.SequenceSimulation.Sequence
• Count : PhyloTree.AttributeDictionary, PhyloTree.SequenceSimulation.Sequence, PhyloTree.TreeCollection

- d -

• DeletionRate : PhyloTree.SequenceSimulation.IndelModel
• DeletionSizeDistribution : PhyloTree.SequenceSimulation.IndelModel

- e -

• End : PhyloTree.SequenceSimulation.Insertion
• EquilibriumFrequencies : PhyloTree.SequenceSimulation.ImmutableRateMatrix, PhyloTree.SequenceSimulation.MutableRateMatrix, PhyloTree.SequenceSimulation.RateMatrix

- g -

• GlobalNames : PhyloTree.Formats.BinaryTreeMetadata

- i -

• Id : PhyloTree.TreeNode
• IndelProfile : PhyloTree.SequenceSimulation.Sequence
• InsertionRate : PhyloTree.SequenceSimulation.IndelModel
• InsertionSizeDistribution : PhyloTree.SequenceSimulation.IndelModel
• IsNumeric : PhyloTree.Formats.Attribute
• IsReadOnly : PhyloTree.AttributeDictionary, PhyloTree.TreeCollection

- k -

• Keys : PhyloTree.AttributeDictionary

- l -

• Length : PhyloTree.AttributeDictionary, PhyloTree.SequenceSimulation.Insertion, PhyloTree.SequenceSimulation.Sequence, PhyloTree.TreeNode

- n -

• Name : PhyloTree.AttributeDictionary, PhyloTree.TreeNode
• Names : PhyloTree.Formats.BinaryTreeMetadata

- p -

• Parent : PhyloTree.TreeNode

- r -

• RandomNumberGenerator : PhyloTree.SequenceSimulation.SequenceSimulation

- s -

• Start : PhyloTree.SequenceSimulation.Insertion
• States : PhyloTree.SequenceSimulation.ImmutableRateMatrix, PhyloTree.SequenceSimulation.MutableRateMatrix, PhyloTree.SequenceSimulation.RateMatrix, PhyloTree.SequenceSimulation.Sequence
• StringSequence : PhyloTree.SequenceSimulation.Sequence
• Support : PhyloTree.AttributeDictionary, PhyloTree.TreeNode

- t -

• TemporaryFile : PhyloTree.TreeCollection
• this[char from, char to] : PhyloTree.SequenceSimulation.ImmutableRateMatrix, PhyloTree.SequenceSimulation.IMutableRateMatrix, PhyloTree.SequenceSimulation.MutableRateMatrix, PhyloTree.SequenceSimulation.RateMatrix
• this[int from, int to] : PhyloTree.SequenceSimulation.ImmutableRateMatrix, PhyloTree.SequenceSimulation.IMutableRateMatrix, PhyloTree.SequenceSimulation.MutableRateMatrix, PhyloTree.SequenceSimulation.RateMatrix
• this[int index] : PhyloTree.SequenceSimulation.Sequence, PhyloTree.TreeCollection
• this[string name] : PhyloTree.AttributeDictionary
• TreeAddresses : PhyloTree.Formats.BinaryTreeMetadata

- u -

• UnderlyingStream : PhyloTree.TreeCollection

- v -

• Values : PhyloTree.AttributeDictionary