This inheritance list is sorted roughly, but not completely, alphabetically:

[detail level 123]

CPhyloTree.Formats.BinaryTree	Contains methods to read and write tree files in binary format.
CPhyloTree.Formats.BinaryTreeMetadata	Holds metadata information about a file containing trees in binary format.
CPhyloTree.TreeBuilding.BirthDeathTree	Contains methods to simulate birth-death trees.
CPhyloTree.TreeBuilding.CoalescentTree	Contains methods to simulate coalescent trees.
CPhyloTree.TreeBuilding.DistanceMatrix	Contains methods to compute distance matrices.
CPhyloTree.SequenceSimulation.RateMatrix.DNA	Contains rate matrices for DNA sequence evolution.
▼CException
CPhyloTree.SequenceScores.MissingDataException	Exception that is thrown when not enough data has been supplied.
▼CIDictionary
CPhyloTree.AttributeDictionary	Represents the attributes of a node. Attributes Name, Length and Support are always included. See the respective properties for default values.
▼CIDisposable
CPhyloTree.TreeCollection	Represents a collection of TreeNode objects. If the full representations of the TreeNode objects reside in memory, this offers the best performance at the expense of memory usage. Alternatively, the trees may be read on demand from a stream in binary format. In this case, accessing any of the trees will require the tree to be parsed. This reduces memory usage, but worsens performance. The internal storage model of the collection is transparent to consumers (except for the difference in performance/memory usage).
▼CIEquatable
CPhyloTree.Formats.Attribute	Describes an attribute of a node.
▼CIList
CPhyloTree.TreeCollection	Represents a collection of TreeNode objects. If the full representations of the TreeNode objects reside in memory, this offers the best performance at the expense of memory usage. Alternatively, the trees may be read on demand from a stream in binary format. In this case, accessing any of the trees will require the tree to be parsed. This reduces memory usage, but worsens performance. The internal storage model of the collection is transparent to consumers (except for the difference in performance/memory usage).
CPhyloTree.SequenceSimulation.IndelModel	Represents a model for sequence insertion/deletion.
CPhyloTree.SequenceSimulation.Insertion	Represents an insertion event.
▼CIReadOnlyList
CPhyloTree.SequenceSimulation.Sequence	Represents a sequence of characters.
CPhyloTree.TreeCollection	Represents a collection of TreeNode objects. If the full representations of the TreeNode objects reside in memory, this offers the best performance at the expense of memory usage. Alternatively, the trees may be read on demand from a stream in binary format. In this case, accessing any of the trees will require the tree to be parsed. This reduces memory usage, but worsens performance. The internal storage model of the collection is transparent to consumers (except for the difference in performance/memory usage).
CPhyloTree.SequenceScores.LikelihoodScores	Contains methods to compute likelihood scores on a tree.
CPhyloTree.Formats.NcbiAsnBer	Contains methods to read and write trees in the NCBI ASN.1 binary format. Note: this is a hackish reverse-engineering of the NCBI binary ASN format. A lot of this is derived by assumptions and observations.
CPhyloTree.Formats.NcbiAsnText	Contains methods to read and write trees in the NCBI ASN.1 text format.
CPhyloTree.TreeBuilding.NeighborJoining	Contains methods to compute neighbour-joining trees.
CPhyloTree.Formats.NEXUS	Contains methods to read and write trees in NEXUS format.
CPhyloTree.Formats.NWKA	Contains methods to read and write trees in Newick and Newick-with-Attributes (NWKA) format.
CPhyloTree.SequenceScores.ParsimonyScore	Contains methods to compute parsimony scores for a tree.
CPhyloTree.SequenceSimulation.RateMatrix.Protein	Contains rate matrices for protein sequence evolution.
▼CRandom
CPhyloTree.TreeBuilding.ThreadSafeRandom	Represents a thread-safe random number generator.
CPhyloTree.TreeBuilding.RandomTree	Contains methods to generate random trees.
▼CPhyloTree.SequenceSimulation.RateMatrix	Represents a rate matrix for a continuous-type Markov chain model. This type cannot be instantiated directly, please use MutableRateMatrix or ImmutableRateMatrix instead, or access the static members for some pre-baked common rate matrices for DNA and protein evolution.
▼CPhyloTree.SequenceSimulation.IMutableRateMatrix	Represents a rate matrix whose values can be changed after initialisation.
CPhyloTree.SequenceSimulation.MutableRateMatrix	Represents a rate matrix whose values can be changed after initialisation.
CPhyloTree.SequenceSimulation.ImmutableRateMatrix	Represents a rate matrix whose values cannot be changed after initialisation.
CPhyloTree.SequenceSimulation.SequenceSimulation	Contains methods to simulate sequence evolution.
CPhyloTree.TreeNode	Represents a node in a tree (or a whole tree).
CPhyloTree.Extensions.TypeExtensions	Useful extension methods
CPhyloTree.TreeBuilding.UPGMA	Contains methods to compute UPGMA trees.