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TreeNode 1.5.2
A library to manipulate phylogenetic trees
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This is the complete list of members for PhyloTree.TreeNode, including all inherited members.
| Attributes | PhyloTree.TreeNode | |
| Children | PhyloTree.TreeNode | |
| Clone() | PhyloTree.TreeNode | |
| CollessIndex(NullHypothesis model=NullHypothesis.None, double yhkExpectation=double.NaN) | PhyloTree.TreeNode | |
| CreateDistanceMatrixDouble(int maxDegreeOfParallelism=0, Action< double > progressCallback=null) | PhyloTree.TreeNode | |
| CreateDistanceMatrixFloat(int maxDegreeOfParallelism=0, Action< double > progressCallback=null) | PhyloTree.TreeNode | |
| EdgeLengthDistance(TreeNode otherTree) | PhyloTree.TreeNode | |
| EdgeLengthDistance(TreeNode tree1, TreeNode tree2) | PhyloTree.TreeNode | static |
| EdgeLengthDistances(IReadOnlyList< TreeNode > trees, TreeComparisonPruningMode pruningMode=TreeComparisonPruningMode.Pairwise, int maxThreadCount=-1, IProgress< double > progress=null) | PhyloTree.TreeNode | static |
| GetChildrenRecursive() | PhyloTree.TreeNode | |
| GetChildrenRecursiveLazy() | PhyloTree.TreeNode | |
| GetCollessExpectationYHK(int numberOfLeaves) | PhyloTree.TreeNode | static |
| GetDepth() | PhyloTree.TreeNode | |
| GetLastCommonAncestor(IEnumerable< TreeNode > monophyleticConstraint) | PhyloTree.TreeNode | static |
| GetLastCommonAncestor(params string[] monophyleticConstraint) | PhyloTree.TreeNode | |
| GetLastCommonAncestor(IEnumerable< string > monophyleticConstraint) | PhyloTree.TreeNode | |
| GetLeafNames() | PhyloTree.TreeNode | |
| GetLeaves() | PhyloTree.TreeNode | |
| GetNodeFromId(string nodeId) | PhyloTree.TreeNode | |
| GetNodeFromName(string nodeName) | PhyloTree.TreeNode | |
| GetNodeNames() | PhyloTree.TreeNode | |
| GetRootedTree(TreeNode outgroup, double position=0.5) | PhyloTree.TreeNode | |
| GetRootNode() | PhyloTree.TreeNode | |
| GetSplit() (defined in PhyloTree.TreeNode) | PhyloTree.TreeNode | |
| GetSplits() | PhyloTree.TreeNode | |
| GetUnrootedTree() | PhyloTree.TreeNode | |
| Id | PhyloTree.TreeNode | |
| IsClockLike(double tolerance=0.001) | PhyloTree.TreeNode | |
| IsLastCommonAncestor(IEnumerable< string > monophyleticConstraint) | PhyloTree.TreeNode | |
| IsRooted() | PhyloTree.TreeNode | |
| Length | PhyloTree.TreeNode | |
| LongestDownstreamLength() | PhyloTree.TreeNode | |
| Name | PhyloTree.TreeNode | |
| NodeRelationship enum name | PhyloTree.TreeNode | |
| NullHypothesis enum name | PhyloTree.TreeNode | |
| NumberOfCherries(NullHypothesis model=NullHypothesis.None) | PhyloTree.TreeNode | |
| Parent | PhyloTree.TreeNode | |
| PathLengthTo(TreeNode otherNode, NodeRelationship nodeRelationship=NodeRelationship.Unknown) | PhyloTree.TreeNode | |
| Prune(bool leaveParent) | PhyloTree.TreeNode | |
| Prune(TreeNode nodeToPrune, bool leaveParent) | PhyloTree.TreeNode | |
| RobinsonFouldsDistance(TreeNode otherTree, bool weighted) | PhyloTree.TreeNode | |
| RobinsonFouldsDistance(TreeNode tree1, TreeNode tree2, bool weighted) | PhyloTree.TreeNode | static |
| RobinsonFouldsDistances(IReadOnlyList< TreeNode > trees, bool weighted, TreeComparisonPruningMode pruningMode=TreeComparisonPruningMode.Pairwise, int maxThreadCount=-1, IProgress< double > progress=null) | PhyloTree.TreeNode | static |
| RobinsonFouldsDistances(IReadOnlyList< TreeNode > trees, out double[,] RFDistances, out double[,] weightedRFDistances, TreeComparisonPruningMode pruningMode=TreeComparisonPruningMode.Pairwise, int maxThreadCount=-1, IProgress< double > progress=null) | PhyloTree.TreeNode | static |
| SackinIndex(NullHypothesis model=NullHypothesis.None) | PhyloTree.TreeNode | |
| ShortestDownstreamLength() | PhyloTree.TreeNode | |
| side1 | PhyloTree.TreeNode | |
| SortNodes(bool descending) | PhyloTree.TreeNode | |
| Support | PhyloTree.TreeNode | |
| ToString() | PhyloTree.TreeNode | |
| TotalLength() | PhyloTree.TreeNode | |
| TreeComparisonPruningMode enum name | PhyloTree.TreeNode | |
| TreeDistances(IReadOnlyList< TreeNode > trees, out double[,] RFDistances, out double[,] weightedRFDistances, out double[,] ELDistances, TreeComparisonPruningMode pruningMode=TreeComparisonPruningMode.Pairwise, int maxThreadCount=-1, IProgress< double > progress=null) | PhyloTree.TreeNode | static |
| TreeNode(TreeNode parent) | PhyloTree.TreeNode | |
| UpstreamLength() | PhyloTree.TreeNode |