TreeNode 1.5.2
A library to manipulate phylogenetic trees
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PhyloTree.TreeNode Member List

This is the complete list of members for PhyloTree.TreeNode, including all inherited members.

AttributesPhyloTree.TreeNode
ChildrenPhyloTree.TreeNode
Clone()PhyloTree.TreeNode
CollessIndex(NullHypothesis model=NullHypothesis.None, double yhkExpectation=double.NaN)PhyloTree.TreeNode
CreateDistanceMatrixDouble(int maxDegreeOfParallelism=0, Action< double > progressCallback=null)PhyloTree.TreeNode
CreateDistanceMatrixFloat(int maxDegreeOfParallelism=0, Action< double > progressCallback=null)PhyloTree.TreeNode
EdgeLengthDistance(TreeNode otherTree)PhyloTree.TreeNode
EdgeLengthDistance(TreeNode tree1, TreeNode tree2)PhyloTree.TreeNodestatic
EdgeLengthDistances(IReadOnlyList< TreeNode > trees, TreeComparisonPruningMode pruningMode=TreeComparisonPruningMode.Pairwise, int maxThreadCount=-1, IProgress< double > progress=null)PhyloTree.TreeNodestatic
GetChildrenRecursive()PhyloTree.TreeNode
GetChildrenRecursiveLazy()PhyloTree.TreeNode
GetCollessExpectationYHK(int numberOfLeaves)PhyloTree.TreeNodestatic
GetDepth()PhyloTree.TreeNode
GetLastCommonAncestor(IEnumerable< TreeNode > monophyleticConstraint)PhyloTree.TreeNodestatic
GetLastCommonAncestor(params string[] monophyleticConstraint)PhyloTree.TreeNode
GetLastCommonAncestor(IEnumerable< string > monophyleticConstraint)PhyloTree.TreeNode
GetLeafNames()PhyloTree.TreeNode
GetLeaves()PhyloTree.TreeNode
GetNodeFromId(string nodeId)PhyloTree.TreeNode
GetNodeFromName(string nodeName)PhyloTree.TreeNode
GetNodeNames()PhyloTree.TreeNode
GetRootedTree(TreeNode outgroup, double position=0.5)PhyloTree.TreeNode
GetRootNode()PhyloTree.TreeNode
GetSplit() (defined in PhyloTree.TreeNode)PhyloTree.TreeNode
GetSplits()PhyloTree.TreeNode
GetUnrootedTree()PhyloTree.TreeNode
IdPhyloTree.TreeNode
IsClockLike(double tolerance=0.001)PhyloTree.TreeNode
IsLastCommonAncestor(IEnumerable< string > monophyleticConstraint)PhyloTree.TreeNode
IsRooted()PhyloTree.TreeNode
LengthPhyloTree.TreeNode
LongestDownstreamLength()PhyloTree.TreeNode
NamePhyloTree.TreeNode
NodeRelationship enum namePhyloTree.TreeNode
NullHypothesis enum namePhyloTree.TreeNode
NumberOfCherries(NullHypothesis model=NullHypothesis.None)PhyloTree.TreeNode
ParentPhyloTree.TreeNode
PathLengthTo(TreeNode otherNode, NodeRelationship nodeRelationship=NodeRelationship.Unknown)PhyloTree.TreeNode
Prune(bool leaveParent)PhyloTree.TreeNode
Prune(TreeNode nodeToPrune, bool leaveParent)PhyloTree.TreeNode
RobinsonFouldsDistance(TreeNode otherTree, bool weighted)PhyloTree.TreeNode
RobinsonFouldsDistance(TreeNode tree1, TreeNode tree2, bool weighted)PhyloTree.TreeNodestatic
RobinsonFouldsDistances(IReadOnlyList< TreeNode > trees, bool weighted, TreeComparisonPruningMode pruningMode=TreeComparisonPruningMode.Pairwise, int maxThreadCount=-1, IProgress< double > progress=null)PhyloTree.TreeNodestatic
RobinsonFouldsDistances(IReadOnlyList< TreeNode > trees, out double[,] RFDistances, out double[,] weightedRFDistances, TreeComparisonPruningMode pruningMode=TreeComparisonPruningMode.Pairwise, int maxThreadCount=-1, IProgress< double > progress=null)PhyloTree.TreeNodestatic
SackinIndex(NullHypothesis model=NullHypothesis.None)PhyloTree.TreeNode
ShortestDownstreamLength()PhyloTree.TreeNode
side1PhyloTree.TreeNode
SortNodes(bool descending)PhyloTree.TreeNode
SupportPhyloTree.TreeNode
ToString()PhyloTree.TreeNode
TotalLength()PhyloTree.TreeNode
TreeComparisonPruningMode enum namePhyloTree.TreeNode
TreeDistances(IReadOnlyList< TreeNode > trees, out double[,] RFDistances, out double[,] weightedRFDistances, out double[,] ELDistances, TreeComparisonPruningMode pruningMode=TreeComparisonPruningMode.Pairwise, int maxThreadCount=-1, IProgress< double > progress=null)PhyloTree.TreeNodestatic
TreeNode(TreeNode parent)PhyloTree.TreeNode
UpstreamLength()PhyloTree.TreeNode