TreeNode 1.5.2
A library to manipulate phylogenetic trees
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This is the complete list of members for PhyloTree.TreeNode, including all inherited members.
Attributes | PhyloTree.TreeNode | |
Children | PhyloTree.TreeNode | |
Clone() | PhyloTree.TreeNode | |
CollessIndex(NullHypothesis model=NullHypothesis.None, double yhkExpectation=double.NaN) | PhyloTree.TreeNode | |
CreateDistanceMatrixDouble(int maxDegreeOfParallelism=0, Action< double > progressCallback=null) | PhyloTree.TreeNode | |
CreateDistanceMatrixFloat(int maxDegreeOfParallelism=0, Action< double > progressCallback=null) | PhyloTree.TreeNode | |
EdgeLengthDistance(TreeNode otherTree) | PhyloTree.TreeNode | |
EdgeLengthDistance(TreeNode tree1, TreeNode tree2) | PhyloTree.TreeNode | static |
EdgeLengthDistances(IReadOnlyList< TreeNode > trees, TreeComparisonPruningMode pruningMode=TreeComparisonPruningMode.Pairwise, int maxThreadCount=-1, IProgress< double > progress=null) | PhyloTree.TreeNode | static |
GetChildrenRecursive() | PhyloTree.TreeNode | |
GetChildrenRecursiveLazy() | PhyloTree.TreeNode | |
GetCollessExpectationYHK(int numberOfLeaves) | PhyloTree.TreeNode | static |
GetDepth() | PhyloTree.TreeNode | |
GetLastCommonAncestor(IEnumerable< TreeNode > monophyleticConstraint) | PhyloTree.TreeNode | static |
GetLastCommonAncestor(params string[] monophyleticConstraint) | PhyloTree.TreeNode | |
GetLastCommonAncestor(IEnumerable< string > monophyleticConstraint) | PhyloTree.TreeNode | |
GetLeafNames() | PhyloTree.TreeNode | |
GetLeaves() | PhyloTree.TreeNode | |
GetNodeFromId(string nodeId) | PhyloTree.TreeNode | |
GetNodeFromName(string nodeName) | PhyloTree.TreeNode | |
GetNodeNames() | PhyloTree.TreeNode | |
GetRootedTree(TreeNode outgroup, double position=0.5) | PhyloTree.TreeNode | |
GetRootNode() | PhyloTree.TreeNode | |
GetSplit() (defined in PhyloTree.TreeNode) | PhyloTree.TreeNode | |
GetSplits() | PhyloTree.TreeNode | |
GetUnrootedTree() | PhyloTree.TreeNode | |
Id | PhyloTree.TreeNode | |
IsClockLike(double tolerance=0.001) | PhyloTree.TreeNode | |
IsLastCommonAncestor(IEnumerable< string > monophyleticConstraint) | PhyloTree.TreeNode | |
IsRooted() | PhyloTree.TreeNode | |
Length | PhyloTree.TreeNode | |
LongestDownstreamLength() | PhyloTree.TreeNode | |
Name | PhyloTree.TreeNode | |
NodeRelationship enum name | PhyloTree.TreeNode | |
NullHypothesis enum name | PhyloTree.TreeNode | |
NumberOfCherries(NullHypothesis model=NullHypothesis.None) | PhyloTree.TreeNode | |
Parent | PhyloTree.TreeNode | |
PathLengthTo(TreeNode otherNode, NodeRelationship nodeRelationship=NodeRelationship.Unknown) | PhyloTree.TreeNode | |
Prune(bool leaveParent) | PhyloTree.TreeNode | |
Prune(TreeNode nodeToPrune, bool leaveParent) | PhyloTree.TreeNode | |
RobinsonFouldsDistance(TreeNode otherTree, bool weighted) | PhyloTree.TreeNode | |
RobinsonFouldsDistance(TreeNode tree1, TreeNode tree2, bool weighted) | PhyloTree.TreeNode | static |
RobinsonFouldsDistances(IReadOnlyList< TreeNode > trees, bool weighted, TreeComparisonPruningMode pruningMode=TreeComparisonPruningMode.Pairwise, int maxThreadCount=-1, IProgress< double > progress=null) | PhyloTree.TreeNode | static |
RobinsonFouldsDistances(IReadOnlyList< TreeNode > trees, out double[,] RFDistances, out double[,] weightedRFDistances, TreeComparisonPruningMode pruningMode=TreeComparisonPruningMode.Pairwise, int maxThreadCount=-1, IProgress< double > progress=null) | PhyloTree.TreeNode | static |
SackinIndex(NullHypothesis model=NullHypothesis.None) | PhyloTree.TreeNode | |
ShortestDownstreamLength() | PhyloTree.TreeNode | |
side1 | PhyloTree.TreeNode | |
SortNodes(bool descending) | PhyloTree.TreeNode | |
Support | PhyloTree.TreeNode | |
ToString() | PhyloTree.TreeNode | |
TotalLength() | PhyloTree.TreeNode | |
TreeComparisonPruningMode enum name | PhyloTree.TreeNode | |
TreeDistances(IReadOnlyList< TreeNode > trees, out double[,] RFDistances, out double[,] weightedRFDistances, out double[,] ELDistances, TreeComparisonPruningMode pruningMode=TreeComparisonPruningMode.Pairwise, int maxThreadCount=-1, IProgress< double > progress=null) | PhyloTree.TreeNode | static |
TreeNode(TreeNode parent) | PhyloTree.TreeNode | |
UpstreamLength() | PhyloTree.TreeNode |