TreeNode 1.5.2
A library to manipulate phylogenetic trees
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PhyloTree.TreeBuilding.DistanceMatrix Member List

This is the complete list of members for PhyloTree.TreeBuilding.DistanceMatrix, including all inherited members.

BootstrapDNASequences(IEnumerable< string > sequences)PhyloTree.TreeBuilding.DistanceMatrixstatic
BootstrapDNASequences(IReadOnlyList< string > sequences)PhyloTree.TreeBuilding.DistanceMatrixstatic
BootstrapProteinSequences(IEnumerable< string > sequences)PhyloTree.TreeBuilding.DistanceMatrixstatic
BootstrapProteinSequences(IReadOnlyList< string > sequences)PhyloTree.TreeBuilding.DistanceMatrixstatic
BootstrapReplicateFromAlignment(float[][] allocatedMatrix, IReadOnlyList< string > sequences, AlignmentType alignmentType=AlignmentType.Autodetect, EvolutionModel evolutionModel=EvolutionModel.Kimura, int numCores=0, Action< double > progressCallback=null)PhyloTree.TreeBuilding.DistanceMatrixstatic
BootstrapReplicateFromAlignment(IReadOnlyList< string > sequences, AlignmentType alignmentType=AlignmentType.Autodetect, EvolutionModel evolutionModel=EvolutionModel.Kimura, int numCores=0, Action< double > progressCallback=null)PhyloTree.TreeBuilding.DistanceMatrixstatic
BootstrapReplicateFromAlignment(Dictionary< string, string > alignment, AlignmentType alignmentType=AlignmentType.Autodetect, EvolutionModel evolutionModel=EvolutionModel.Kimura, int numCores=0, Action< double > progressCallback=null)PhyloTree.TreeBuilding.DistanceMatrixstatic
BootstrapReplicateFromAlignment(float[][] allocatedMatrix, Dictionary< string, string > alignment, AlignmentType alignmentType=AlignmentType.Autodetect, EvolutionModel evolutionModel=EvolutionModel.Kimura, int numCores=0, Action< double > progressCallback=null)PhyloTree.TreeBuilding.DistanceMatrixstatic
BuildFromAlignment(IReadOnlyList< byte[]> sequences, EvolutionModel evolutionModel=EvolutionModel.Kimura, int numCores=-1, Action< double > progressCallback=null)PhyloTree.TreeBuilding.DistanceMatrixstatic
BuildFromAlignment(IReadOnlyList< ushort[]> sequences, EvolutionModel evolutionModel=EvolutionModel.Kimura, int numCores=-1, Action< double > progressCallback=null)PhyloTree.TreeBuilding.DistanceMatrixstatic
BuildFromAlignment(float[][] allocatedMatrix, IReadOnlyList< byte[]> sequences, EvolutionModel evolutionModel=EvolutionModel.Kimura, int numCores=-1, Action< double > progressCallback=null)PhyloTree.TreeBuilding.DistanceMatrixstatic
BuildFromAlignment(float[][] allocatedMatrix, IReadOnlyList< ushort[]> sequences, EvolutionModel evolutionModel=EvolutionModel.Kimura, int numCores=0, Action< double > progressCallback=null)PhyloTree.TreeBuilding.DistanceMatrixstatic
BuildFromAlignment(float[][] allocatedMatrix, IReadOnlyList< string > sequences, AlignmentType alignmentType=AlignmentType.Autodetect, EvolutionModel evolutionModel=EvolutionModel.Kimura, int numCores=0, Action< double > progressCallback=null)PhyloTree.TreeBuilding.DistanceMatrixstatic
BuildFromAlignment(IReadOnlyList< string > sequences, AlignmentType alignmentType=AlignmentType.Autodetect, EvolutionModel evolutionModel=EvolutionModel.Kimura, int numCores=0, Action< double > progressCallback=null)PhyloTree.TreeBuilding.DistanceMatrixstatic
BuildFromAlignment(Dictionary< string, string > alignment, AlignmentType alignmentType=AlignmentType.Autodetect, EvolutionModel evolutionModel=EvolutionModel.Kimura, int numCores=0, Action< double > progressCallback=null)PhyloTree.TreeBuilding.DistanceMatrixstatic
BuildFromAlignment(float[][] allocatedMatrix, Dictionary< string, string > alignment, AlignmentType alignmentType=AlignmentType.Autodetect, EvolutionModel evolutionModel=EvolutionModel.Kimura, int numCores=0, Action< double > progressCallback=null)PhyloTree.TreeBuilding.DistanceMatrixstatic
CompareProteinSequencesBLOSUM62(ushort[] sequence1, ushort[] sequence2, int selfScore1, int selfScore2)PhyloTree.TreeBuilding.DistanceMatrixstatic
ConvertDNASequences(IEnumerable< string > sequences)PhyloTree.TreeBuilding.DistanceMatrixstatic
ConvertDNASequences(IReadOnlyList< string > sequences)PhyloTree.TreeBuilding.DistanceMatrixstatic
ConvertProteinSequence(string sequence)PhyloTree.TreeBuilding.DistanceMatrixstatic
ConvertProteinSequences(IEnumerable< string > sequences)PhyloTree.TreeBuilding.DistanceMatrixstatic
ConvertProteinSequences(IReadOnlyList< string > sequences)PhyloTree.TreeBuilding.DistanceMatrixstatic