TreeNode 1.5.2
A library to manipulate phylogenetic trees
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PhyloTree.SequenceSimulation.SequenceSimulation Member List

This is the complete list of members for PhyloTree.SequenceSimulation.SequenceSimulation, including all inherited members.

ConservationToScale(TreeNode tree, RateMatrix rateMatrix, double minRate=1e-5, double maxRate=1e4)PhyloTree.SequenceSimulation.SequenceSimulationstatic
GetScale(double conservation)PhyloTree.SequenceSimulation.SequenceSimulation
RandomNumberGeneratorPhyloTree.SequenceSimulation.SequenceSimulationstatic
SimulateAllSequences(this TreeNode tree, Sequence ancestralSequence, RateMatrix rateMatrix, double scale=1, IndelModel indelModel=null)PhyloTree.SequenceSimulation.SequenceSimulationstatic
SimulateAllSequences(this TreeNode tree, int ancestralSequenceLength, RateMatrix rateMatrix, double scale=1, IndelModel indelModel=null)PhyloTree.SequenceSimulation.SequenceSimulationstatic
SimulateSequences(this TreeNode tree, Sequence ancestralSequence, RateMatrix rateMatrix, double scale=1, IndelModel indelModel=null)PhyloTree.SequenceSimulation.SequenceSimulationstatic
SimulateSequences(this TreeNode tree, int ancestralSequenceLength, RateMatrix rateMatrix, double scale=1, IndelModel indelModel=null)PhyloTree.SequenceSimulation.SequenceSimulationstatic
ToStringAlignment(this Dictionary< string, Sequence > alignment)PhyloTree.SequenceSimulation.SequenceSimulationstatic